Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MEPIEVFKALSNESRLQILQWLKEPDRHFAPHEGIDMNTIGVCVSQITDKLKMTQSTASQYLTILLRAGLIKAERI---GKYTYYKRDEEAIGKLADFLKTEI--------
1UB9 Chain:A ((1-100))
MEELKEIMKSHILGNPVRLGIMIFLLPRRKAP--------------FSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVIDGLDL
General information:
TITO was launched using:
RESULT:
Template:
1UB9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40679 for 574 contacts (-70.9/contact) +
2D Compatibility (PS) -9122 + (NN) -1530 + (LL) 568
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -57763.0 ( -100.63 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_1UB9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB9-query.scw
PDB file :
Tito_Scwrl_1UB9.pdb
: