Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTLKIDIKGRGKYKPASDYSIDDVKNVLMEKIFEESSRIINSDDDLEIIEKVDFRTDKINVLSLFSGCGGLDLGFELAGLAAVIGEQAAMEAFKDKDRFNELRNKSIFHTIYTNDLFKEANQTYKTNFPGHVIQHEKDIRQVKY--FPKCNLILGGFPCPGFSEAGPR-LIDDDRNFLYLHFIRSLIQAQPEIFVAENVKGMMTLGKGEVLNQIIEDFASAGYRVQFKLLNARDYGVPQLRERVIIEGVRKDISFNYKYPSPTHGEETGLKPFKTLRDSIGDLVTDPGPYF----T-GSY-------------SSIYMSRNRKKSWDEQSFTIQASGRQAPLHPGGLSMKKIGKDK-WVFPDGEENHRRLSVKEIARVQTFPDWFQFSQG-TNSQTSINNRLDKQYKQIGNAVPVLLAKAVASPIANWAINYLESSPNNKIKNRERKLSIRTFLRIKTS
3UBT Chain:Y ((1-328))----------------------------------------------------------MNLISLFSGAGGLDLGFQKAGF----------------------------RIICANEYDKSIWKTYESNHSAK--LIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPH-------LIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFH-YESLN---------DGYKMIGNAVPVNLAYEIAKTIKSALEICK--------------------------


General information:
TITO was launched using:
RESULT:

Template: 3UBT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain Y - contact count / total energy / energy per contact / energy per residue : 1544 40464 26.21 132.67
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain Y : 0.73

3D Compatibility (PKB) : 26.21
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.404

(partial model without unconserved sides chains):
PDB file : Tito_3UBT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3UBT-query.scw
PDB file : Tito_Scwrl_3UBT.pdb: