Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKL---AINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGNGTVQATVSTTVEVEGSAKPACVAESIVRYVA
4RV2 Chain:A ((9-146))
------------IVGMHYRYPDFYEVGREKIREHALAIKNDETYFYDEDAAAELGHDALPAPLTFICIFGYQAQSAFFDHADIGVREAKIVQVDQELKFFKPIKAGDRLYCDVYVHAVRRADIIVTKNIITND-------AGEIVQEAYTTLAG
General information:
TITO was launched using:
RESULT:
Template:
4RV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61068 for 959 contacts (-63.7/contact) +
2D Compatibility (PS) -14358 + (NN) -3400 + (LL) 1828
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -81498.0 ( -84.98 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_4RV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV2-query.scw
PDB file :
Tito_Scwrl_4RV2.pdb
: