Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRL-NNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR------GR-------------------------ADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRALGK
1DVR Chain:B ((5-219))
IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK
General information:
TITO was launched using:
RESULT:
Template:
1DVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58916 for 1320 contacts (-44.6/contact) +
2D Compatibility (PS) -20529 + (NN) -16369 + (LL) 0
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -116464.0 ( -88.23 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_1DVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVR-query.scw
PDB file :
Tito_Scwrl_1DVR.pdb
: