Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHF-GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
2YVP Chain:A ((2-180))
---SPWERILLEEILSEPV-RLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVD-EGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVTPPT-LEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2YVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87579 for 1280 contacts (-68.4/contact) +
2D Compatibility (PS) -19220 + (NN) -3331 + (LL) 2528
1D Compatibility (HY) -5200 + (ID) 2500
Total energy: -115302.0 ( -90.08 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_2YVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVP-query.scw
PDB file :
Tito_Scwrl_2YVP.pdb
: