Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDTVLGLSITPTTLGWVLAEGHG-ADGAILDRNELELHSGRNAQAIHTAEQLAAEVLLAHEVAAAGDHRLRVIGVTWNAEASAQAALLVESL-TGAGFDNVVPVRRLRAIETLAQAIAPVIGYEQIAVCVLEHESATVVMVDTHDGKTQIAVKHVCRGLSGLTSWLTGMFGRDAWRPAGVVVVGSDSEVSEFSWQLERVLPVPVFAQTMAQVTVARGAALAAAQSTEFTDAQLVADSVSQPTVAPRRSRHYAGAAAALAAAAVTFVASLSLAVGIQLAPHNDTGTAKHGAHKPTPRIAKAVAPAVPPPPTVTPPVPARAPRPAAQHEPPARVTSGEALTEPNPPEEQPNASAPQQDRNDSQPITRVLEHIPGAYGDSAPPAE |
3DNF Chain:A ((1-281)) | ------------MVDIIIAEHAGFCFGVKRAVKLAEESLKESQGKVYTLGPIIHNPQEVNRLKNLG------VFPSQGEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVID----ATCPYVKAVHEAVCQLTREGYFVVLVGEKN-----------------HPEVIGTLGYLRACNGKGIVVETLEDIGEALKHE----RVGIVAQT--------------TQNEEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIG-------------GKNSGNTRRLYYISKELNPNTYHIET--AEELQPEWFRGVKRVGISAG--------------ASTP------DWIIEQVKSRIQEI--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3DNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -96329 for 2264 contacts (-42.5/contact) +
2D Compatibility (PS) -29745 + (NN) -8210 + (LL) 5876
1D Compatibility (HY) -5600 + (ID) 2300
Total energy: -136308.0 ( -60.21 by residue)
QMean score : 0.213
|
|
|