Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIRTPLAETV-GSRLTKPPLLVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVPYLDSLPDDLTDVPVMVLDPMVATGGSMTHTLGLLISRGAAD--ITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
1UPU Chain:C ((27-222))
------------AMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFG--
General information:
TITO was launched using:
RESULT:
Template:
1UPU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144898 for 1460 contacts (-99.2/contact) +
2D Compatibility (PS) -20726 + (NN) -8270 + (LL) 1200
1D Compatibility (HY) -16400 + (ID) 3600
Total energy: -192694.0 ( -131.98 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1UPU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UPU-query.scw
PDB file :
Tito_Scwrl_1UPU.pdb
: