Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTG--GGRLLALACV-DGHGSVLMPCGRCRQVLLEHGGSELLI-----DHPVRPRRLGDLLPDAFGLDDLPRERR
3DMO Chain:B ((28-135))
----------------------PYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETHGPI-APCGACRQVMIELGKPTLEVVLTNMQGDVRVTSAGDLLPDAF----------
General information:
TITO was launched using:
RESULT:
Template:
3DMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72334 for 697 contacts (-103.8/contact) +
2D Compatibility (PS) -11203 + (NN) -5694 + (LL) 1888
1D Compatibility (HY) -7600 + (ID) 2550
Total energy: -97493.0 ( -139.88 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_3DMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMO-query.scw
PDB file :
Tito_Scwrl_3DMO.pdb
: