Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKAGTH
2UXS Chain:C ((8-166))
VQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA---
General information:
TITO was launched using:
RESULT:
Template:
2UXS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52326 for 1193 contacts (-43.9/contact) +
2D Compatibility (PS) -17260 + (NN) -8138 + (LL) -76
1D Compatibility (HY) -22400 + (ID) 7900
Total energy: -108100.0 ( -90.61 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2UXS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UXS-query.scw
PDB file :
Tito_Scwrl_2UXS.pdb
: