Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCVEQDPKYSAGWKLLGKARQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDRART
2VYI Chain:A ((110-194))
-AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP---
General information:
TITO was launched using:
RESULT:
Template:
2VYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14735 for 639 contacts (-23.1/contact) +
2D Compatibility (PS) -9823 + (NN) -9203 + (LL) 536
1D Compatibility (HY) -2400 + (ID) 750
Total energy: -36375.0 ( -56.92 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_2VYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VYI-query.scw
PDB file :
Tito_Scwrl_2VYI.pdb
: