Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYVDGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDK-----INSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYARGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMPGEPSREVKGEIIDVPRGVTQIGQ--FDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKLSYALVLMASRPLSVTDRVQNP |
5CMN Chain:E ((3-260)) | LCPGLLK--------GVYQSEHLFESDHQSGAWCK-DPL-QASDKIYYMPWT------------------PYRTDTLTEYSSKDDFI--AGRPTTTYKLPHRVDGTGFVVYDGALFFNKERTRNIVKFDLRTRIKSGEAIIANANY------------HDTSPYRWGGKSDI----------DLAVD--ENGLWVIYATEQNNGKIVISQLNPYTLRIE--------GTWDTAYDKRSASNAFMICGILYVVKSNKIDYIYNTDQSKDSLVDVPFPNSYQY----------IAAVDYNPRDN--------------LLYVWNNYHVVKYSLDF--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5CMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11481 for 2051 contacts (-5.6/contact) +
2D Compatibility (PS) -24770 + (NN) 318 + (LL) 5908
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -44575.0 ( -21.73 by residue)
QMean score : 0.148
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