Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVGRRAVRVLCYVPPMPRRLRHPLADLRLPRWVPCLALLALSGCSTVSYYGQLASGQFALLRA-----REPAAAVIADPQRDARL-RERLAKAEKARQFASERLGLPDNRSYRLYADIGRPYVVWNVFATPELSLQPVTHCFPIAGCVAYRGYYSEA-----AARAEAARQRALGDDVYVGGVQAYSTLGWFDDPILSSMLRWDDER--LATLIFHELAHQKFYLRDDTAFNESFATFVEQEGTRQWREYRGLPPADGREEKRREQFTALVLASRARLEALYAGPLDDAAKRAGKAAEFQRLRREYAALSQREWGGESPFKAWIDAPFNNAKLLPFGLYDQWVAAFAVLFRQVGGNWPAFYARVRALGQLPLAERQAALQRLAAAAP-------- |
| 3TUZ Chain:H ((23-362)) | HMIKLSNITKVFHQGTRTIQALNN-VSLHVPAG-QIYGVIGASGA-----------GKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT--VFGNVALPLELDNT--PKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC-DCVAVISN-GELIEQ----------------------------------DTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDC--VPMLRLEFTGQSVDA-PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TUZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116375 for 2388 contacts (-48.7/contact) +
2D Compatibility (PS) -33770 + (NN) -1900 + (LL) 4064
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -158531.0 ( -66.39 by residue)
QMean score : 0.152
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