Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTLPPCPQCNSEYTYEDGALLVCPECAHEWSPNEAATAS--DDGKVIKDSVGNVLQDGDTITV-------IKDLKVKGSSLVVKVGTKVKNIRLVDGDHDIDCKIDGIGAMKLKSEFVRKV
1I4V Chain:A ((25-139))
AFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLRPTVQLIPMNSAYSPITISSED---TLDVFGVVIHVVKAMR----
General information:
TITO was launched using:
RESULT:
Template:
1I4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11783 for 592 contacts (19.9/contact) +
2D Compatibility (PS) -11343 + (NN) -4406 + (LL) 720
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -5396.0 ( -9.11 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_1I4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I4V-query.scw
PDB file :
Tito_Scwrl_1I4V.pdb
: