Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
4EOB Chain:A ((3-149))
--SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS-----
General information:
TITO was launched using:
RESULT:
Template:
4EOB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105407 for 1265 contacts (-83.3/contact) +
2D Compatibility (PS) -15826 + (NN) -4720 + (LL) 384
1D Compatibility (HY) -20000 + (ID) 7350
Total energy: -152919.0 ( -120.88 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4EOB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EOB-query.scw
PDB file :
Tito_Scwrl_4EOB.pdb
: