Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPE---SLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGP---GMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEA-----------HHRMALEYAASRCAMVVTTDEVLE
3IRV Chain:A ((9-215))
-----------------MSKPLVRWPINPLRTAVIVVDMQKVFCEPTGALYVKSTADIVQPIQKLLQAARAAQVMVIYLRHIVRGDGSDTGRMRDLYPNVDQILARHDPDVEVIEALAPQSDDVIVDKLFYSGFHNTDLDTVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALSDANAAMDYPDVGFGAVSAADVQRISLTTIAYEFGEVTTTAEVIR
General information:
TITO was launched using:
RESULT:
Template:
3IRV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149138 for 1531 contacts (-97.4/contact) +
2D Compatibility (PS) -20409 + (NN) -11260 + (LL) 1000
1D Compatibility (HY) -12400 + (ID) 2550
Total energy: -194757.0 ( -127.21 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_3IRV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IRV-query.scw
PDB file :
Tito_Scwrl_3IRV.pdb
: