Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRGD
4NTM Chain:F ((6-121))
--LFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
General information:
TITO was launched using:
RESULT:
Template:
4NTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73924 for 809 contacts (-91.4/contact) +
2D Compatibility (PS) -12621 + (NN) -7182 + (LL) 312
1D Compatibility (HY) -13600 + (ID) 4450
Total energy: -111465.0 ( -137.78 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4NTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NTM-query.scw
PDB file :
Tito_Scwrl_4NTM.pdb
: