Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MKNAMQVLRTWAARG-VQWVGVAG-VIGLSGAAQAGDYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQSILDAISRPAERVKQWKEYRPIFISDA-----RISRGVDFWNKHAEDLARAEKEYGVPAEIIVSIIGVETFFGRNTGSYRVMDALSTLGFDYPPRADFFRKELREFLLLAREQQVDPLSLTGSYAGAMGLPQFMPSSFRAYAVDFDGDGHINIWSDPTDAIGSVASY----FKQHGWVTGEPVVSVAEINDESAESAVTRGVDPTMSLGE---LRARGWRTHDALRDDQKVT----AMRFVGDKGIEYWVGLPN--FYVITRYNRSAMYAMAVYQLAGEIARARGAH |
| 1GPD Chain:G ((1-333)) | SKIGINGFGRIGRLVLRAALSCGA-QVVAVNDPFIALEYMVYMFKYDSTHG--VFKGEVKME--------DGALVVDGKKITVFNE-MKPENI--PWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSADAP--MFVCGVNLEKY---SKD-MTVVSNASCTTNCLAPVAKVLHEN----FEIVEGLMTTVHAVTATQKTVDG-----PSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSS-DFIGDNRSSIFDAKAGIQL----SKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDSA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -64869 for 2499 contacts (-26.0/contact) +
2D Compatibility (PS) -31683 + (NN) -1874 + (LL) 3216
1D Compatibility (HY) -8400 + (ID) 2600
Total energy: -106210.0 ( -42.50 by residue)
QMean score : 0.067
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