Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRVTLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKKLDVMSNEILLEANEWAGNLAGMASEEMDHPYQIPGRYPKGAYLLVFDPLDGSSNIDVNVSVGTIFSVLRCPNEYLNQNDTLREEAFLQPGTTQVAAGYAIYGPQTMLMLTLGNGVKGFTLDRELGSFVLTHDNISVPESTAEFAINMSNQRHWEAPVKRYVEELLAGKEGPLGKNYNMRWIASMVADVHRILTRGGVFMYPRDAREPEKPGKLRLMYEANPMSFIIEQAGGAATNGTQRILDIKPENLHQRVAVFLGSKQEVERITGYHAE |
3IFA Chain:C ((11-325)) | ---LTLTRYVMEKGRQAKGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGIAGSV-----QVKKLDVLSNSLVINMLQSSYSTCVLVSEE-NKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKTS------DEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDG--SAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPK--GKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQ-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IFA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175656 for 2638 contacts (-66.6/contact) +
2D Compatibility (PS) -33743 + (NN) -20497 + (LL) 1512
1D Compatibility (HY) -26400 + (ID) 6500
Total energy: -261284.0 ( -99.05 by residue)
QMean score : 0.531
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