Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MNQTLNSSGTVESALNYSRGSTVHTAYLVLSSLAMFTCLCGMAGNSMV-----------IWLLGFRMHRNPFCIYILNLAAADLLFLFSMASTLSLETQPLVNTTD----KVHELMKRLMYFAYTVGLSLLTAISTQRCLSVLF--PIWFKCHRPRHLSAW-----VCGLLW--------TLCLLMNGLT------------------SSFCSKFLKFNEDRCFRVDMVQAALIMGVL-TPVMTLSSLTLFVW-------VRRSSQQWRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPPEMQVLCF--------SLSRLSSSVSSSANPVIYFLVGSRRSHRLPTRSLGTVLQQALREEPELEGGETPTVGTNEMGA------------------------------------------------- |
| 1YNH Chain:A ((14-452)) | AWEVNFDGLVGLTHHYAGLSFGNEASTRH--RFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSSASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRS----LEAPVTESLLKAIFNDEEKFSVHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLANLRARVNGFMAIEVPAT--QVSVSDTVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGYLNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YNH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257181 for 2411 contacts (-106.7/contact) +
2D Compatibility (PS) -32472 + (NN) -542 + (LL) 584
1D Compatibility (HY) 0 + (ID) 2400
Total energy: -292011.0 ( -121.12 by residue)
QMean score : 0.088
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