Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MSISNITV------------YMPSVL---------TLVGIP----GLESVQCWIGIPFCAI----YLIAMIGNSLLLSIIKSERSLHEPLYIF-------LGMLGATDIALASSIMPKMLGIFW----------------------FNVPEIYFDSCLLQM--------WFIHTLQGIESGILVAMALDRYVAICYPLRHANIFTHQLVIQIG--TMVV----------LRAAILVAPCLVLIKCRFQFYHTTVISHSYC--EHMAIVKLAA------ANVQVNKIYG---LFVAFTVAGFDLTFITLSYIQ----IFITVFRL------------PQKEARFKAFNTCIAH--ICVFLQFYLLAF-FSFFTHRF-----------GSHISPYIHILFSSIYLLVPPFLNPLVYGAKTTQIRIHVVKMFCS--- |
| 2BMF Chain:A ((169-618)) | MASIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPS---IKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLDARIY---SDPLALKEFKEFAAGRK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2BMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -334583 for 2096 contacts (-159.6/contact) +
2D Compatibility (PS) -32528 + (NN) -2242 + (LL) 160
1D Compatibility (HY) -8000 + (ID) 2850
Total energy: -380043.0 ( -181.32 by residue)
QMean score : 0.167
|
|
|