Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MLVVLQELRDSNSSKFQVSEFILMGFPGIHSWQHWLSLPLALLYLLALSANILILIIINKEAALHQPMYYFLGILAMADIGLATTIMPKILAILWFNAKTISLLECFAQMYAIHCFVAMESSTFVCMAIDRYVAICRPLRYPSIITESFVFKANGFMALRNSLCLISVPLLAAQRHYCSQNQIEHCLCSNLGVTSLSCDDRRINSINQVLLAWTLMGSDLGLIILSYALILYSVLKLNSPEAASKALSTCTSHLILILFFYTVI------IVISITRSTGMRVPLIPVLLNVLHNVIPPALNPMVYALKNKELRQGLYKVLRLGVKGT-------------- |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQF---SMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM--SNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR------YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -282171 for 2570 contacts (-109.8/contact) +
2D Compatibility (PS) -31504 + (NN) -7786 + (LL) 644
1D Compatibility (HY) -19600 + (ID) 2650
Total energy: -343067.0 ( -133.49 by residue)
QMean score : 0.237
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