Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADDNFTVVTEFILLGLTDHAE------LKAVLFVV-----FLVIY--------AITLLRNLGMI-----------LLIQITSKLHTPMYF---LLSCLSFVDACYSSAIAPKMLVNLLVVKATISFSACMVQHLCFGVFITTEGFLLSVMAYDRYVAIVS-----------PLLYTVAMSDRKCVELVTGSWIGGIVNTLIHTISLRRLSFCRLNAVSHFFCDIPSLLKLSCSDTSMNELLLLTFSGVIAMAT--------------FLTVIISYIFIAFASLRIHSASGRQQAFSTCASHLTAVTIFYGTLIFSYIQPSSQYFVEQEKVVSMFYTLGIPMLNLLIHSLRNKDVKEAVKRAIEMKHFLC------ |
4OCV Chain:A ((24-378)) | TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDT--KLNNILMDATTGKARAIIDL------DTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNL--LTMECGMRFLADYLEGDVYFATKY-----------PEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -300581 for 2322 contacts (-129.4/contact) +
2D Compatibility (PS) -29847 + (NN) -3235 + (LL) 2000
1D Compatibility (HY) -2400 + (ID) 2850
Total energy: -336913.0 ( -145.10 by residue)
QMean score : 0.184
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