Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPN-FTDVTEFT-LLGLTCRQELQVLFFVVFLAVY-----MITLLGNIGMIILISISPQLQSPMYFFLSHLSFADVCFSSNVTPKMLENLLSETKTISYVGCLVQCYFFIAVVHVEVYILAVMAFDRYMAGCNPL-LYGSK--------MSRTVCVRLISVPYVYG----FSVSLICTLWTYGLYFCGNFEINHFYCADPPLIQIACGRVHIKEITMIVIAGINFTYSLSVVLISYTLIVVAVL-RMRSADGRRKAFSTCGSHLTAVSMFYGTPIFMYLRRPTEESVEQGKMVAVFYTTVIPMLNPMIYSLRNKDVKEAVNKAITKTYVRQ |
| 4NDN Chain:F ((15-323)) | IPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVDAASQLNVDASGNLAKEAAAVGA---------FLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFP---------THVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPIT---DSPV-LGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251841 for 2276 contacts (-110.7/contact) +
2D Compatibility (PS) -29798 + (NN) 3935 + (LL) 2656
1D Compatibility (HY) -2000 + (ID) 2300
Total energy: -279348.0 ( -122.74 by residue)
QMean score : 0.154
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