Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRNHTEITEFILLGLTDDPNFQVVIFVFLLITYMLSITGNLTLITITLLDSHLQTPMYFFLRNFSILEISFTTVSIPKFLGNIISGDKTISFNNCIVQLFFFILLGVTEFYLLAAMSYDRYVAICKPLHCLSIMNRRVCTLLVFTSWLVSFLIIFPALMLLLKLHYCRSNIIDHFTCDYFPLLQLACSDTKFLEVMGFSCAAFTLMFTLALIFLSYIYIIRTILRIPSTSQRTKAFSTCSSHMVVVSISYGSCIFMYIKPSAKDRVSLSKGVAILNTSVAPMMNPFIYSLRNQQVKQAFINMARKTVFFTST |
4O6Y Chain:A ((10-219)) | -------------PIFMVVRVLGFIIAALVLTWTVHYRGGLALS----------------------------------------SDNKDHIFNVHPVMMVIGLILFNGEAMLAYKSVQG---------------TKNLKKLVHLTLQLTAFILSLIGVWAALKFHI-DKGIENFYS---------------LHSWLGLACL-FLFAFQWAAGFVTYWY--------PGGSRNSRA--SLMPWHVFLGISIYALALVTATTGILEKVTFLQVNQVITRYS-------TEAMLVNTMGVLILILGGFVILGVVT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192881 for 1562 contacts (-123.5/contact) +
2D Compatibility (PS) -21289 + (NN) -2138 + (LL) 9152
1D Compatibility (HY) -15200 + (ID) 1900
Total energy: -224256.0 ( -143.57 by residue)
QMean score : 0.243
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