Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MAPENFTRVTEFILTGVSSCPELQIPLFLVFLVLYVLTMAG-NLGIITLTSVD-SRLQNPMYFFLRHLAIINLGNS-TVIAPKMLMNFLVKKKTTSFYECATQLGGFLFFIVSEVMMLAVMAYDRYVAICNPLLYMVVVSRRLCLL-LVSLTYLYGFSTAIVVSPCIFSVSYCSSNIINHFYCDIAPLLALSCSDTYIPETIVF-ISAATNLV--FSMITVLVSYFNIVLSILRIRSPEGRKK-AFSTCASHM--IAVTVFYGTMLFMYLQPQTNHSLDTDKMASVFYTLVIPMLNPLIYSLRNNDVNVALKKFMENPCYSFKS-M-------- |
| 3GFF Chain:A ((11-329)) | EYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQFDHMASLLQFLSQGTMPQIPKVIIVGIHN------TNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLR-----TNGINVLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFDSP-----------HYLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVSHIGLYDGIRHLFKDFAIDIYFSKQQVIDQYGVLSERFGHKV--TPSQQYLEQLIQYSDRQQLTERKQMLEGLRQHFA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -322305 for 2304 contacts (-139.9/contact) +
2D Compatibility (PS) -30808 + (NN) -8446 + (LL) 2424
1D Compatibility (HY) 2000 + (ID) 1700
Total energy: -358835.0 ( -155.74 by residue)
QMean score : 0.263
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