Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMAQRFQV-AKMLHDGKTYNVIESETGASTATISRVKRSLHYGN------DMYDVVFSRMTKPE
1SF9 Chain:A ((11-128))
VDLGTENLYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKITMAKAYLLNPEDYSPGETYRVENTED---EFTISYLNGVFAWGYRTSSPQQEEALPISVLQEKE
General information:
TITO was launched using:
RESULT:
Template:
1SF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33507 for 600 contacts (-55.8/contact) +
2D Compatibility (PS) -9702 + (NN) 597 + (LL) -56
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -46618.0 ( -77.70 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1SF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SF9-query.scw
PDB file :
Tito_Scwrl_1SF9.pdb
: