Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKFFLESERLIIRPLEESDYDSWYTSFMNRGPSLTPFDDGILDMSMCDINWFKNLVNLQRKEWESDIVYIFGVFLK-SGEHVGMLNIVTLARADMQWGELGYVFHNQFWSNGYAFESILALLNSTYEKLGFHHIEAQITPGNERSENLVRRLGLTYETTRKDFSFENGKWTDKLIYSINLHNNNLE
3FBU Chain:A ((1-168))
---MFIKAERLLIRKFEFKDWEAVHEYTSD--SDVMKY----IPEGVFTEEDTRNFVNKNMG------AKNFPVILIGENILVGHIVFHKYFGE--HTYEIGWVFNPKYFNKGYASEAAQATLKYGFKEMKLHRIIATCQPENTPSYRVMEKIGMRREGYFKKCIPHGNEWWDEYYYAILEEE----
General information:
TITO was launched using:
RESULT:
Template:
3FBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126247 for 1247 contacts (-101.2/contact) +
2D Compatibility (PS) -17588 + (NN) -4716 + (LL) 716
1D Compatibility (HY) -10400 + (ID) 1950
Total energy: -160185.0 ( -128.46 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3FBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FBU-query.scw
PDB file :
Tito_Scwrl_3FBU.pdb
: