Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRDEFGVVSSRIGMRREAVPISDDMDIFSYIQNLPQKPYCVLIDECQFLSKKNVYDLARVVDDLDVPVMAFGLKNDFQNNLFEGSKHLLLLADKIDEIKTICQYCSKKATMVLRTENGKPVY-EGDQIQIGGNETYIPVCRKHYFNPDI
2J9R Chain:A ((28-211))
-GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-----------------VKAVPVSASKDIFKH---ITEEMDVIAIDEVQFFDGDIVEVVQVLA-NRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEPAAFDDPIILVGASESYEPRCRHCHAVPTK
General information:
TITO was launched using:
RESULT:
Template:
2J9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88301 for 1294 contacts (-68.2/contact) +
2D Compatibility (PS) -18332 + (NN) -10827 + (LL) 1384
1D Compatibility (HY) -6400 + (ID) 2050
Total energy: -124526.0 ( -96.23 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_2J9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J9R-query.scw
PDB file :
Tito_Scwrl_2J9R.pdb
: