Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIRKLVVMSDSHGDR---DIVKDIKNHY-LGKVDAIFHNGD----SELPSSDPIWEGIHVVTGNCDYDSGYPEVLVTKIDNTVIVQTHGHLHQINFTWDKLDLLAQQEDADICLYGHLHRADAWKNGKTIFINPGSVLQPRGPINEK---LYAVVTITDSKVLVEYYTRQHQPYPNLTKEFSR-
1W24 Chain:A ((1-182))
---MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGH--QVIPDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP
General information:
TITO was launched using:
RESULT:
Template:
1W24.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92122 for 1338 contacts (-68.9/contact) +
2D Compatibility (PS) -19202 + (NN) -13694 + (LL) 776
1D Compatibility (HY) -10800 + (ID) 2100
Total energy: -137142.0 ( -102.50 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1W24.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W24-query.scw
PDB file :
Tito_Scwrl_1W24.pdb
: