Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIKKVLSVTGIILVTVASLAACSSKSHTTKTGKKEVNFATVGTTAPFSYVKDGKLTGFDIEVAKAVFKGSDNYKVTFKKTEWSSVFTGIDSGKFQMGGNNISYSSERSQKYLFSYPIGSTPSVLAVPKNSNIKAYNDITGHKTQVVQGTTTAKQLENFNKKHQKNPVTLKYTNENITQILTNLSDGKADFKLFDGLTVNAIIKNQGLTNLKTIPLT-MRDQPYIY-FIFGQDQKDLQKYVNNCLKQLRKDGTLSKIAKEYLGGDYVPNEKDLVTPKEK |
2PVU Chain:A ((38-266)) | ------------------------------GATKKKVVVGTDAAFAPFEYMQKGKIVGFDVDLLDAVM-KAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFGK----GPHIKKFE-TTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNF-ASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLDRLKQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PVU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93346 for 1857 contacts (-50.3/contact) +
2D Compatibility (PS) -24786 + (NN) -10281 + (LL) 3000
1D Compatibility (HY) -12400 + (ID) 3050
Total energy: -140863.0 ( -75.86 by residue)
QMean score : 0.422
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