Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIFDKSMKLEHVAYDIRGPVLEEADRMRANG---------EKILRLNTGNPAAFGFEAPDEVIRDLITNA-------------------------------RESEGYSDSKGIFSARKAVMQYYQLQ-NIHVDMDDIYIVNGVSEGISMSMQALL-DNDDEVLVPMPDYPLWTACVSLAGGNAVHYICDEEANWYPDIDDIKSKIT------SKTKAIVLINPNNPTGAVYPREILQEIVDIARQNDLIIFSDEVYDRLVMDGM-EHIPIASI-------AEDIFTVTLSGLSKS-HRICGFRVGWMVLSG-PRQHVKGYIEGLNMLANMRLCSNVLAQQVIQTSLGGQQ-------SIDSMLL-PGGRIYEQRNYIHKAINEIPGLSAVKPNAGLYLFPKIDTDMY--R------IDNDEEFVLNFLKQEKVLLTHGRGFNM-NTADHFRIVYLPRVDELTELQEKMARFLSQYKR |
3TCM Chain:A ((29-495)) | ------NPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYK----IASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TCM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202839 for 3324 contacts (-61.0/contact) +
2D Compatibility (PS) -43201 + (NN) -20348 + (LL) 728
1D Compatibility (HY) -25600 + (ID) 5250
Total energy: -296510.0 ( -89.20 by residue)
QMean score : 0.547
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