Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MYSFEELLATM-----TLITAAEIEDKIDSNQDFVLFIGRISCPFCHLFVPKIVEVADEDEFELFHLDSEDF---DHWTANKEFRNKYDIPTVPGLMVVKNGTIKVKCDSKMTKEEIREFIG---
3EMX Chain:A ((224-347))
SLSYVKEGLAVLEDGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY
General information:
TITO was launched using:
RESULT:
Template:
3EMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83935 for 839 contacts (-100.0/contact) +
2D Compatibility (PS) -11889 + (NN) -2045 + (LL) 40
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -103829.0 ( -123.75 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_3EMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EMX-query.scw
PDB file :
Tito_Scwrl_3EMX.pdb
: