Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELGENTLLLSQDYLRREMLGTKDG----E-NTTTIPLLINLLNYGYHNC---SYIILEGILRSDWYTPVWKHILKHNPNNTYAYYYDLSFQETVKRHSTRLKSLEFGEDSLARWWLEKDFLKEIPEKILTKAMSLEDVKKLIMTDVLP
1LTQ Chain:A ((1-140))
-MKKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT-KAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM
General information:
TITO was launched using:
RESULT:
Template:
1LTQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51245 for 879 contacts (-58.3/contact) +
2D Compatibility (PS) -13729 + (NN) -3328 + (LL) 284
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -71918.0 ( -81.82 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1LTQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LTQ-query.scw
PDB file :
Tito_Scwrl_1LTQ.pdb
: