Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGPRERMVVSAALLIRERGAHATAISDVLQHSGAPRGSAYHYFPGGRTQLLCEAVDYAGEHVAAMINEAEGG--L-ELLDALIDKYRQQLLSTDFRAGCPIAAVSVEAGDEQDRERMAPVIARAAAVFDRWSDLTAQRFIADGIPPDRAHELAVLATSTLEGAILLARVRRDLTPLDLVHRQLRNLLLAELPERSR
2DG8 Chain:A ((8-180))
-PQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFT-GIEQLLREAFGRFTDHIVAVFDEHLGAAADRDEAREAVADLVHELSED-SQRDLVLTQELYTLAA-----RQPAYRELTHEWMRRSRVHLEKHFD---------PGTARQLDALIEGLTLHRALAREPHGRALTLEAIARITTT-------
General information:
TITO was launched using:
RESULT:
Template:
2DG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85818 for 1230 contacts (-69.8/contact) +
2D Compatibility (PS) -18424 + (NN) -8981 + (LL) 716
1D Compatibility (HY) 800 + (ID) 1650
Total energy: -113357.0 ( -92.16 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2DG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DG8-query.scw
PDB file :
Tito_Scwrl_2DG8.pdb
: