Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
3K8Y Chain:A ((1-166))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3K8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100884 for 1370 contacts (-73.6/contact) +
2D Compatibility (PS) -18235 + (NN) -4206 + (LL) 488
1D Compatibility (HY) -23200 + (ID) 8300
Total energy: -154337.0 ( -112.65 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_3K8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8Y-query.scw
PDB file :
Tito_Scwrl_3K8Y.pdb
: