Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
4J69 Chain:A ((1-124))
--------------------------KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
4J69.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39127 for 918 contacts (-42.6/contact) +
2D Compatibility (PS) -13935 + (NN) -11392 + (LL) 3040
1D Compatibility (HY) -11600 + (ID) 5050
Total energy: -78064.0 ( -85.04 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_4J69.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J69-query.scw
PDB file :
Tito_Scwrl_4J69.pdb
: