Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
2J27 Chain:B ((2-250))
--SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ
General information:
TITO was launched using:
RESULT:
Template:
2J27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -201586 for 2159 contacts (-93.4/contact) +
2D Compatibility (PS) -27123 + (NN) -10987 + (LL) 352
1D Compatibility (HY) -29200 + (ID) 9150
Total energy: -277694.0 ( -128.62 by residue)
QMean score : 0.850
(partial model without unconserved sides chains):
PDB file :
Tito_2J27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J27-query.scw
PDB file :
Tito_Scwrl_2J27.pdb
: