Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPLLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPQGAHFLAKSLDDALKLIEQPELASKVDMVWVVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLEKYKLLPEYPGVLSEIQEEKGIKYKFEVYEKKD
1DHF Chain:A ((4-185))
----LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN-
General information:
TITO was launched using:
RESULT:
Template:
1DHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124420 for 1344 contacts (-92.6/contact) +
2D Compatibility (PS) -19587 + (NN) -8446 + (LL) 284
1D Compatibility (HY) -25600 + (ID) 8250
Total energy: -186019.0 ( -138.41 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1DHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DHF-query.scw
PDB file :
Tito_Scwrl_1DHF.pdb
: