Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGHHGWGYGQDDGPSHWHKLYP---IA-QGDRQSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGHSVQVDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKGTKAQFSCFNPKCLLPASRHYWTYPGSLTTPPLSESVTWIVLREPICISERQMGKFRSLLFTSEDDERIHMVNNFRPPQPLKGRVVKASFRA
1KOP Chain:A ((1-222))
---HTHWGYTGHDSPESWGNLSEEFRLCSTGKNQSPVNITE---TVSGKLPAIKVNYKPSM-VDVENNGHTIQVNYPEG--GNTLTVNG--RTYTLKQFHFHV------PSENQIKGRTFPMEAHFVHLDEN------------KQPLVLAVLYEAGKTNGRLSSIWNVMPMTA--GKVKLNQPFDASTLLPKRLKYYRFAGSLTTPPCTEGVSWLVLKTYDHIDQAQAEKFTRAVG---------S-ENNRPVQPLNARVVI-----
General information:
TITO was launched using:
RESULT:
Template:
1KOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117069 for 1692 contacts (-69.2/contact) +
2D Compatibility (PS) -23973 + (NN) -14121 + (LL) 2356
1D Compatibility (HY) -15200 + (ID) 3900
Total energy: -171907.0 ( -101.60 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1KOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KOP-query.scw
PDB file :
Tito_Scwrl_1KOP.pdb
: