Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF
3VV1 Chain:A ((31-158))
-PQTPVNIPVQ-GFSNGARLRLVLLPTSADSRFHINLRTPD----DIVLHFNARFDEGAVVNNSTSGGGWQSEDRHA-NPFQQNKIYTLEFVSNGGIISIFVNGAHFADFVERTPSHGVHLIEIEGGVHVHSAHV-
General information:
TITO was launched using:
RESULT:
Template:
3VV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87978 for 968 contacts (-90.9/contact) +
2D Compatibility (PS) -13504 + (NN) -4218 + (LL) 296
1D Compatibility (HY) -8000 + (ID) 2050
Total energy: -115454.0 ( -119.27 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3VV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VV1-query.scw
PDB file :
Tito_Scwrl_3VV1.pdb
: