Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
4JLM Chain:B ((39-280))
------------------TRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN---------ELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4JLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116744 for 1798 contacts (-64.9/contact) +
2D Compatibility (PS) -24366 + (NN) -3873 + (LL) 992
1D Compatibility (HY) -33600 + (ID) 11450
Total energy: -189041.0 ( -105.14 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_4JLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLM-query.scw
PDB file :
Tito_Scwrl_4JLM.pdb
: