Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSHMLEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
3GHZ Chain:C ((4-159))
------MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMK---
General information:
TITO was launched using:
RESULT:
Template:
3GHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113057 for 1329 contacts (-85.1/contact) +
2D Compatibility (PS) -17337 + (NN) -9914 + (LL) 592
1D Compatibility (HY) -21200 + (ID) 7700
Total energy: -168616.0 ( -126.87 by residue)
QMean score : 0.761
(partial model without unconserved sides chains):
PDB file :
Tito_3GHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHZ-query.scw
PDB file :
Tito_Scwrl_3GHZ.pdb
: