Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTPNSMTENGLTAWDKPKHCPDREHDWKLVGMSEACLHRKSHSERRSTLKNEQSSPHLIQTTWTSSIFHLDHDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVAT-NAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVD-----LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH--FWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED |
1SKX Chain:A ((25-313)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTEEQRMMIRELMDAQMKTFDTTFSHFKNFR---LPGVKVSLQLRGEDGSVWNYKPPIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLSYCLELL--------LEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP--FATPLMQELFGI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SKX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148198 for 1733 contacts (-85.5/contact) +
2D Compatibility (PS) -24988 + (NN) -16048 + (LL) 12888
1D Compatibility (HY) -20400 + (ID) 3200
Total energy: -199946.0 ( -115.38 by residue)
QMean score : 0.559
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