Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLANSSSTNSSVLPC---PDYRPTHRLHLVVYSLVLAAGLPLNALALWVFLRALRVHSVVSVYMCNLAASDLLFTLSLPVRLSYYALHHWPFPDLLCQTTGAIFQMNMYGSCIFLMLINVDRYAAIVHPLRLRHLRRPRVARLLCLGVWALILVFAVPAARVHRPS------RCRYRDLEVRLCFESFSDELWKGRLLPLVLLAEALGFLLPLAA------------------VVYSSGRVFWTLARPDATQSQRRRKTVRLLLANLV----------IFLLCFVPYNSTLAVYGLLRSKLVAASVPARDRVR-GVLMVMVLLAGANCV--LDPLVYYFSAEGFRNTLRGLG-------TPHRAR---TSATNGTRAAL---AQSERSAVTTDATRPDAASQGLLRPSDSHSLSSFT-------QCPQDSAL------------------------------------------------ |
3ODU Chain:A ((37-502)) | -------------PCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVAN-WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215587 for 2394 contacts (-90.1/contact) +
2D Compatibility (PS) -36399 + (NN) -6018 + (LL) 692
1D Compatibility (HY) -22800 + (ID) 3950
Total energy: -284062.0 ( -118.66 by residue)
QMean score : 0.200
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