Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MLQNQDTMEILSNSTSKFPTFLLTGIPGLESAHVWISIPF-----CCFYAIALSGNSVILFVIITQQ-SLHEPMYYFLFRLSATDLGLTV-SSLSTTLGILWFE-AREISLYSCIVQM----FFLHGFTFMESGVLVATAFDRYVAICDPLRYTTILTNSRII------------------------------QMGLLMITRAIVLILPLLLLLKPLYFCRMN-AL---SHSYCYH-PD--------------------------------------------VIQLACSDIRANSICGLIDL-ILTTGIDTPCIVLSYILII-HSVLRIASPEEWHKVFSTCVSHVGAVAFFYIHML-SLSLVYRYGRSAPRVVHSVMANVYLLLPPVLNPIIDSVKTKQIRKAMLSLLLTK-- |
| 4DQV Chain:A ((21-457)) | TEVHASDLTLDRFIDADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCAL-PVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVASSLAGFATYHVMNPHDDGIGLDEYVDWLIEAGYPIRRIDDFAEWLQRFEASLGALPDRQRRHSVLPMLLNSQRLQGCSAPTDRFRAAVRAAKVGSDKDNPDIPHVSAPTIINYVTNLQLLGLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DQV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -211366 for 2144 contacts (-98.6/contact) +
2D Compatibility (PS) -31635 + (NN) 10421 + (LL) 64
1D Compatibility (HY) 17200 + (ID) 2000
Total energy: -217316.0 ( -101.36 by residue)
QMean score : 0.070
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