Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MPLFNSLCWFPTIHVTPPSFILNG-IPGLERVHVWISLPLCTMYIIFLVGN-----LGLVYLIYYEESLHHPMYFF--------FGHALSLIDLLTCTT-TLPNAL---------CIFWFSLKEI---NFNACLAQMFFVHGFTG---VESGVLMLMALD----RYVAICY--------------------PLRYATTLTNPIIAKAELA------TFLRGVLLMIPFPFLVKRLPF------------CQSNIISHTYCDHMSVVKLSCASIKVNVIYGLMVALLIGVFDICCISLSYTLILKAAISLSSSDARQKAFSTCTAHISAIIITYVPAFFTFFAHRFGGHTIPPSLHIIVANLYLLLP-PTLN---PIVYGVKTKQIRKSVIKFFQGDKGAG---------------------- |
| 1WCD Chain:J ((11-431)) | IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQGNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFDGTTVITRAVAANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSARGSLAVTIHGGNYPGALRPVTLVAYE--RVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVAD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1WCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -421344 for 2384 contacts (-176.7/contact) +
2D Compatibility (PS) -34027 + (NN) 7545 + (LL) -40
1D Compatibility (HY) -1600 + (ID) 2400
Total energy: -451866.0 ( -189.54 by residue)
QMean score : 0.054
|
|
|