Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MGAKNNVTEFVLFGLFESREMQHTCFVVFFLFHVLTVLGNLLVIITINARKT-LKSPMYFFLSQLSFADICYPSTTIPKMIADTFVEHKIISFNGCMTQLFSAHFFGGTEIFL------------------LTAMAY--------DRYVAIC---------RPLHYTAIMDCRKCGLLAGASWLAGFLHSILQTLLTVQLPFCGPNE-IDNFFCDVHPLLKLACAD------TYMVGLIVVANSGMISLASF-----FILIISYVIILLNLRSQSSEDRRKAVSTCGSHVITVLLVLM-------------------PPMFMYIRPSTTLAADKLIILF---------NIVMPPLLNPLIYTLRNNDVKNAMRKLFRVKRSLGEK---------------------- |
| 4JND Chain:A ((18-441)) | EDHIGDRRRSVRSLLEEAFADEMEKTSYDVEVIAGPVHDVFGDAIHDIFQKMMKRGQAVDFCHWVSHLIATEIDEKFSEVAFRDVQYNPDIYVTDSTTEAKKLFNDKIWPAIDKILQQNAETCPILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGH--GGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMTVRSVKECWKGGSTAVCCAIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREARRVEEAGGQLFVIGGELRVNGVLNLTRALGDVPGRPMISNEPETCQVPIESSDYLVLLACDGISDVFNERDLYQLVEAFANDYPVEDYAELSRFICTKAIEAGSADNVSVVIGFLRPPQDVWKLMKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -283088 for 2264 contacts (-125.0/contact) +
2D Compatibility (PS) -32149 + (NN) -186 + (LL) 120
1D Compatibility (HY) 400 + (ID) 2150
Total energy: -317053.0 ( -140.04 by residue)
QMean score : 0.188
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