Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MSNEDMEQDNTTLLTEFVLTGLT-YQPEWKMPLFLVFLVIYLITIVWNLGLIALIWNDPQLHIPMYF-----FLGSLAFVDAWISSTVTPKMLVNFLAKNRMISLSECMIQFFSFAFGGTTECFLLA---TMAYDRYVAICKPLLYPVIMNN------SLCIRLLAFSFLGGFLHA-------------LIHEVLIFRLTFCNSNI-------IHHFYCDIIPLFMISCTDP--------SINFLMVFILSGSIQVFTIVTVLNSYTFALFTILKKKSVRGVRKAFSTCGAHLLSVSL------YYGPLIFMYLR-PASPQADDQDMIDSV----------------FYTII---------IPLLNPIIYSLRNKQVIDSFTKMVKRNV----------------------------------------------------------------- |
| 4U1D Chain:A ((9-496)) | FRPENAIKRADELISVGEKQAALQSLHDFITARRIRWATPSTVEPVVFKFLEIGVELKKGKLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQKQEIDAITSWLRFTWESYRAVLDLLRNNALLEITYSGVVKKTMHFCLKYQRKNEFKRLAEMLRQHLDAANYQQSKSGNNLVDLSDADTLQRYLDQRFQQVDVSVKLELWHEAYRSIEDVFHLMKISKRAPKPSTLANYYENLVKVFFVSGD---PLLHTTAWKKFYKLYSTNPRATEEEFKTYSSTIFLSAISTQLDEIPSIGYDPHLRMYRLLNLDAKPTRKEMLQSIIEDESIYGKVDEELKELYDIIEVNFDVDTVKQQLENLLVKLSSKTYFSQYIAPLRDVIMRRVFVAASQKFTTVSQSELYKLATLPAPLDLSAWDIEKSLLQAAVEDYVSITIDHESAKVTFAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261701 for 2168 contacts (-120.7/contact) +
2D Compatibility (PS) -31625 + (NN) -11462 + (LL) 516
1D Compatibility (HY) -5200 + (ID) 2350
Total energy: -311822.0 ( -143.83 by residue)
QMean score : 0.197
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