Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLNFTDVTEFILLGLTSRREWQVL---FFIIFLV-VY-------IITMVGNIGMMVL--IKVSPQLNNPMYFFLSH--------LSFVDVWFSS-NVTPKMLENLL-SDK---------------------KTITYAGCLVQCFFFIALVHVEIFILA-AMAFDRYMAIGNPLLYGSKMSRVVCIRLITFPYIYGFLTSLAATLWTYGLYFCGKIEINHFYCADPPLIKMACAGTFVKEYT-----MIILAGINFTYSLTVIIISYLFILI-----AILRMRSAEGRQKAFSTC-GSHLTAVIIFYGTLIFMYLRRPTEESVEQGKMVA-VFYTTVIPMLNPMIYSLRNKDVKKAMMKVISRSC------- |
| 4Q98 Chain:A ((9-365)) | VVETNATVSFIIKSGESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCKSGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFTIKPGSNHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYQNYYS------FKPADAKIAALVAKKDSKIFG--NSLVSN---TNAYLYGVQTPAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDGNPLTEPALTDAINAGFCDGDGTTYYPVLVNYDGNGYIYSGAITQG---QNKIVRNNHYKISLNITGPGTNTPENPQPVQANLNVTCQVTPWVVVNQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -346351 for 2194 contacts (-157.9/contact) +
2D Compatibility (PS) -31493 + (NN) 1631 + (LL) 1124
1D Compatibility (HY) -2400 + (ID) 2500
Total energy: -379989.0 ( -173.19 by residue)
QMean score : 0.114
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