Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHADLNCLCSYKNSPWLSIYNIDPNRAMQLPAKCGLTMPANC
M048 Chain:A ((1-120))
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHADLNCLCSYKNSPWLSIYNIDPNRAMQLPAKCGLTMPANC
General information:
TITO was launched using:
RESULT:
Template:
M048.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30222 for 525 contacts (-57.6/contact) +
2D Compatibility (PS) -7904 + (NN) -5280 + (LL) 0
1D Compatibility (HY) -10000 + (ID) 3800
Total energy: -57206.0 ( -108.96 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_M048.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M048-query.scw
PDB file :
Tito_Scwrl_M048.pdb
: